IL_9NLQ_097

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

9NLQ|1|R1|A|2572, 9NLQ|1|R1|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_097 not in the Motif Atlas

Homologous match to IL_4WF9_096

Geometric discrepancy: 0.125

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9NLQ|1|R1|C|2512
9NLQ|1|R1|A|2513
*
9NLQ|1|R1|U|2571
9NLQ|1|R1|A|2572
9NLQ|1|R1|C|2573
9NLQ|1|R1|G|2574

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 3

50S ribosomal protein L3