IL_9NLQ_112
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLQ_112 not in the Motif Atlas
- Homologous match to IL_5J7L_356
- Geometric discrepancy: 0.1318
- The information below is about IL_5J7L_356
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9NLQ|1|R2|G|23
9NLQ|1|R2|G|24
9NLQ|1|R2|U|25
9NLQ|1|R2|C|26
9NLQ|1|R2|C|27
9NLQ|1|R2|C|28
*
9NLQ|1|R2|G|56
9NLQ|1|R2|A|57
9NLQ|1|R2|A|58
9NLQ|1|R2|A|59
9NLQ|1|R2|C|60
Current chains
- Chain R2
- 5S ribosomal RNA
Nearby chains
- Chain 18
- Large ribosomal subunit protein uL18
- Chain 5
- 50S ribosomal protein L5
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