IL_9NLQ_127

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9NLQ|1|R3|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_127 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1532

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9NLQ|1|R3|G|147
9NLQ|1|R3|G|148
9NLQ|1|R3|A|149
9NLQ|1|R3|U|150
9NLQ|1|R3|A|151
9NLQ|1|R3|A|152
9NLQ|1|R3|C|153
*
9NLQ|1|R3|G|168
9NLQ|1|R3|C|169
9NLQ|1|R3|U|170
9NLQ|1|R3|A|171
9NLQ|1|R3|A|172
9NLQ|1|R3|U|173
9NLQ|1|R3|A|174
9NLQ|1|R3|C|175

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20