IL_9NLQ_128

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9NLQ|1|R3|U|244, 9NLQ|1|R3|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_128 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1614

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9NLQ|1|R3|G|242
9NLQ|1|R3|A|243
9NLQ|1|R3|U|244
9NLQ|1|R3|U|245
9NLQ|1|R3|A|246
9NLQ|1|R3|G|247
*
9NLQ|1|R3|C|277
9NLQ|1|R3|G|278
9NLQ|1|R3|A|279
9NLQ|1|R3|C|280
9NLQ|1|R3|G|281
9NLQ|1|R3|A|282
9NLQ|1|R3|U|283
9NLQ|1|R3|C|284

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17