IL_9NLQ_138
3D structure
- PDB id
- 9NLQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9NLQ|1|R3|A|532, 9NLQ|1|R3|U|534, 9NLQ|1|R3|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NLQ_138 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.2854
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9NLQ|1|R3|G|515
9NLQ|1|R3|U|516
9NLQ|1|R3|G|517
9NLQ|1|R3|C|518
9NLQ|1|R3|C|519
9NLQ|1|R3|A|520
9NLQ|1|R3|G|521
*
9NLQ|1|R3|C|528
9NLQ|1|R3|G|529
9NLQ|1|R3|G|530
9NLQ|1|R3|U|531
9NLQ|1|R3|A|532
9NLQ|1|R3|A|533
9NLQ|1|R3|U|534
9NLQ|1|R3|A|535
9NLQ|1|R3|C|536
Current chains
- Chain R3
- 16S ribosomal RNA
Nearby chains
- Chain M
- mRNA
- Chain sc
- Small ribosomal subunit protein uS3
- Chain sd
- 30S ribosomal protein S4
- Chain sl
- Small ribosomal subunit protein uS12
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