IL_9NLQ_146

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9NLQ|1|R3|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_146 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1135

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9NLQ|1|R3|U|662
9NLQ|1|R3|A|663
9NLQ|1|R3|G|664
9NLQ|1|R3|A|665
9NLQ|1|R3|G|666
*
9NLQ|1|R3|U|740
9NLQ|1|R3|G|741
9NLQ|1|R3|G|742
9NLQ|1|R3|A|743

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sf

30S ribosomal protein S6, non-modified isoform

Chain so

Small ribosomal subunit protein uS15

Chain sr

30S ribosomal protein S18