IL_9NLQ_150

3D structure

PDB id

9NLQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLQ_150 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0924

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9NLQ|1|R3|G|887
9NLQ|1|R3|G|888
9NLQ|1|R3|A|889
9NLQ|1|R3|G|890
9NLQ|1|R3|U|891
9NLQ|1|R3|A|892
9NLQ|1|R3|C|893
9NLQ|1|R3|G|894
*
9NLQ|1|R3|U|905
9NLQ|1|R3|A|906
9NLQ|1|R3|A|907
9NLQ|1|R3|A|908
9NLQ|1|R3|A|909
9NLQ|1|R3|C|910

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12