IL_9NLS_016

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NLS|1|R1|G|801, 9NLS|1|R1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0948

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9NLS|1|R1|G|674
9NLS|1|R1|A|675
9NLS|1|R1|A|676
9NLS|1|R1|A|677
9NLS|1|R1|C|678
*
9NLS|1|R1|G|799
9NLS|1|R1|A|800
9NLS|1|R1|G|801
9NLS|1|R1|A|802
9NLS|1|R1|U|803
9NLS|1|R1|A|804
9NLS|1|R1|G|805
9NLS|1|R1|C|806

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 15

Large ribosomal subunit protein uL15

Chain 4

Large ribosomal subunit protein uL4