IL_9NLS_021

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

9NLS|1|R1|G|776, 9NLS|1|R1|A|788, 9NLS|1|R1|A|789, 9NLS|1|R1|U|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_021 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0904

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

9NLS|1|R1|G|775
9NLS|1|R1|G|776
9NLS|1|R1|G|777
*
9NLS|1|R1|C|787
9NLS|1|R1|A|788
9NLS|1|R1|A|789
9NLS|1|R1|U|790
9NLS|1|R1|C|791

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L2

Chain 22

Large ribosomal subunit protein uL22

Chain 34

50S ribosomal protein L34