IL_9NLS_022

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

9NLS|1|R1|U|846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_022 not in the Motif Atlas

Geometric match to IL_5J7L_267

Geometric discrepancy: 0.1924

The information below is about IL_5J7L_267

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

9NLS|1|R1|A|844
9NLS|1|R1|A|845
9NLS|1|R1|U|846
9NLS|1|R1|U|847
*
9NLS|1|R1|A|933
9NLS|1|R1|U|934

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 30

50S ribosomal protein L30