IL_9NLS_043

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9NLS|1|R1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_043 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.108

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9NLS|1|R1|C|1208
9NLS|1|R1|U|1209
9NLS|1|R1|G|1210
9NLS|1|R1|C|1211
9NLS|1|R1|G|1212
9NLS|1|R1|A|1213
9NLS|1|R1|A|1214
9NLS|1|R1|G|1215
*
9NLS|1|R1|U|1234
9NLS|1|R1|G|1235
9NLS|1|R1|G|1236
9NLS|1|R1|A|1237
9NLS|1|R1|G|1238

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 20

Large ribosomal subunit protein bL20