IL_9NLS_046

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

9NLS|1|R1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_046 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1782

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9NLS|1|R1|C|1319
9NLS|1|R1|C|1320
9NLS|1|R1|A|1321
9NLS|1|R1|A|1322
9NLS|1|R1|C|1323
*
9NLS|1|R1|G|1331
9NLS|1|R1|G|1332
9NLS|1|R1|G|1333

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 22

Large ribosomal subunit protein uL22