IL_9NLS_052

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9NLS|1|R1|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_052 not in the Motif Atlas

Homologous match to IL_9DFE_054

Geometric discrepancy: 0.2209

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9NLS|1|R1|C|1417
9NLS|1|R1|G|1418
9NLS|1|R1|A|1419
9NLS|1|R1|A|1420
9NLS|1|R1|G|1421
*
9NLS|1|R1|C|1577
9NLS|1|R1|U|1578
9NLS|1|R1|A|1579
9NLS|1|R1|A|1580
9NLS|1|R1|G|1581

Current chains

Chain R1

23S ribosomal RNA

Nearby chains