IL_9NLS_056

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9NLS|1|R1|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_056 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.342

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9NLS|1|R1|U|1468
9NLS|1|R1|A|1469
9NLS|1|R1|A|1470
9NLS|1|R1|G|1471
*
9NLS|1|R1|U|1520
9NLS|1|R1|G|1521
9NLS|1|R1|A|1522
9NLS|1|R1|U|1523
9NLS|1|R1|G|1524

Current chains

Chain R1

23S ribosomal RNA

Nearby chains