IL_9NLS_057

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_057 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1659

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9NLS|1|R1|U|1474
9NLS|1|R1|G|1475
9NLS|1|R1|U|1476
9NLS|1|R1|A|1477
9NLS|1|R1|G|1478
*
9NLS|1|R1|U|1513
9NLS|1|R1|G|1514
9NLS|1|R1|A|1515
9NLS|1|R1|G|1516
9NLS|1|R1|G|1517

Current chains

Chain R1

23S ribosomal RNA

Nearby chains