3D structure

PDB id
9NLS (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
ACUAGG*CUGU
Length
10 nucleotides
Bulged bases
9NLS|1|R1|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NLS_065 not in the Motif Atlas
Homologous match to IL_4WF9_065
Geometric discrepancy: 0.112
The information below is about IL_4WF9_065
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76758.2
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

9NLS|1|R1|A|1669
9NLS|1|R1|C|1670
9NLS|1|R1|U|1671
9NLS|1|R1|A|1672
9NLS|1|R1|G|1673
9NLS|1|R1|G|1674
*
9NLS|1|R1|C|1990
9NLS|1|R1|U|1991
9NLS|1|R1|G|1992
9NLS|1|R1|U|1993

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 14
50S ribosomal protein L14
Chain 3
50S ribosomal protein L3

Coloring options:


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