3D structure

PDB id
9NLS (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UUAAUUGAUG*UUGAUCGAAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9NLS_074 not in the Motif Atlas
Homologous match to IL_5J7L_387
Geometric discrepancy: 0.1049
The information below is about IL_5J7L_387
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61249.1
Basepair signature
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

9NLS|1|R1|U|1851
9NLS|1|R1|U|1852
9NLS|1|R1|A|1853
9NLS|1|R1|A|1854
9NLS|1|R1|U|1855
9NLS|1|R1|U|1856
9NLS|1|R1|G|1857
9NLS|1|R1|A|1858
9NLS|1|R1|U|1859
9NLS|1|R1|G|1860
*
9NLS|1|R1|U|1882
9NLS|1|R1|U|1883
9NLS|1|R1|G|1884
9NLS|1|R1|A|1885
9NLS|1|R1|U|1886
9NLS|1|R1|C|1887
9NLS|1|R1|G|1888
9NLS|1|R1|A|1889
9NLS|1|R1|A|1890
9NLS|1|R1|G|1891

Current chains

Chain R1
23S ribosomal RNA

Nearby chains

Chain 1
Large ribosomal subunit protein uL1
Chain Y
Probable ATP-binding protein YbiT

Coloring options:


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