IL_9NLS_107

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9NLS|1|R1|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_107 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0834

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9NLS|1|R1|G|2737
9NLS|1|R1|A|2738
9NLS|1|R1|U|2739
9NLS|1|R1|A|2740
9NLS|1|R1|A|2741
9NLS|1|R1|G|2742
*
9NLS|1|R1|C|2762
9NLS|1|R1|G|2763
9NLS|1|R1|A|2764
9NLS|1|R1|A|2765
9NLS|1|R1|A|2766
9NLS|1|R1|C|2767

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 13

Large ribosomal subunit protein uL13

Chain 36

50S ribosomal protein L36

Chain 6

Large ribosomal subunit protein uL6