IL_9NLS_129

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9NLS|1|R3|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1389

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

9NLS|1|R3|G|147
9NLS|1|R3|G|148
9NLS|1|R3|A|149
9NLS|1|R3|U|150
9NLS|1|R3|A|151
9NLS|1|R3|A|152
9NLS|1|R3|C|153
*
9NLS|1|R3|G|168
9NLS|1|R3|C|169
9NLS|1|R3|U|170
9NLS|1|R3|A|171
9NLS|1|R3|A|172
9NLS|1|R3|U|173
9NLS|1|R3|A|174
9NLS|1|R3|C|175

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain st

30S ribosomal protein S20