IL_9NLS_131

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9NLS|1|R3|U|244, 9NLS|1|R3|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_131 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1542

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9NLS|1|R3|G|242
9NLS|1|R3|A|243
9NLS|1|R3|U|244
9NLS|1|R3|U|245
9NLS|1|R3|A|246
9NLS|1|R3|G|247
*
9NLS|1|R3|C|277
9NLS|1|R3|G|278
9NLS|1|R3|A|279
9NLS|1|R3|C|280
9NLS|1|R3|G|281
9NLS|1|R3|A|282
9NLS|1|R3|U|283
9NLS|1|R3|C|284

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12

Chain sq

Small ribosomal subunit protein uS17