IL_9NLS_140

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9NLS|1|R3|A|532, 9NLS|1|R3|U|534, 9NLS|1|R3|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_140 not in the Motif Atlas

Homologous match to IL_4LFB_021

Geometric discrepancy: 0.2698

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9NLS|1|R3|G|515
9NLS|1|R3|U|516
9NLS|1|R3|G|517
9NLS|1|R3|C|518
9NLS|1|R3|C|519
9NLS|1|R3|A|520
9NLS|1|R3|G|521
*
9NLS|1|R3|C|528
9NLS|1|R3|G|529
9NLS|1|R3|G|530
9NLS|1|R3|U|531
9NLS|1|R3|A|532
9NLS|1|R3|A|533
9NLS|1|R3|U|534
9NLS|1|R3|A|535
9NLS|1|R3|C|536

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain M

mRNA

Chain sc

Small ribosomal subunit protein uS3

Chain sl

Small ribosomal subunit protein uS12