IL_9NLS_146

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_146 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.1041

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

9NLS|1|R3|G|654
9NLS|1|R3|A|655
*
9NLS|1|R3|U|751
9NLS|1|R3|G|752
9NLS|1|R3|A|753
9NLS|1|R3|C|754

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sh

30S ribosomal protein S8

Chain so

Small ribosomal subunit protein uS15