IL_9NLS_153

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_153 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0907

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

9NLS|1|R3|G|887
9NLS|1|R3|G|888
9NLS|1|R3|A|889
9NLS|1|R3|G|890
9NLS|1|R3|U|891
9NLS|1|R3|A|892
9NLS|1|R3|C|893
9NLS|1|R3|G|894
*
9NLS|1|R3|U|905
9NLS|1|R3|A|906
9NLS|1|R3|A|907
9NLS|1|R3|A|908
9NLS|1|R3|A|909
9NLS|1|R3|C|910

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sl

Small ribosomal subunit protein uS12