IL_9NLS_170

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NLS_170 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1369

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9NLS|1|R3|C|1303
9NLS|1|R3|G|1304
9NLS|1|R3|G|1305
9NLS|1|R3|A|1306
9NLS|1|R3|U|1307
9NLS|1|R3|U|1308
*
9NLS|1|R3|A|1329
9NLS|1|R3|U|1330
9NLS|1|R3|G|1331
9NLS|1|R3|A|1332
9NLS|1|R3|A|1333
9NLS|1|R3|G|1334

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain Y

Probable ATP-binding protein YbiT

Chain sm

30S ribosomal protein S13