IL_9NO7_006
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NO7_006 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0568
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9NO7|1|A|G|188
9NO7|1|A|G|189
9NO7|1|A|A|190
9NO7|1|A|A|191
9NO7|1|A|C|192
9NO7|1|A|U|193
9NO7|1|A|G|194
*
9NO7|1|A|C|201
9NO7|1|A|U|202
9NO7|1|A|C|203
9NO7|1|A|A|204
9NO7|1|A|G|205
9NO7|1|A|U|206
9NO7|1|A|A|207
9NO7|1|A|C|208
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain 7
- 50S ribosomal protein L34
- Chain 8
- 50S ribosomal protein L35
- Chain P
- 50S ribosomal protein L15
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