IL_9NO7_016

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9NO7|1|A|G|801, 9NO7|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_016 not in the Motif Atlas

Geometric match to IL_9DFE_016

Geometric discrepancy: 0.0706

The information below is about IL_9DFE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

9NO7|1|A|G|674
9NO7|1|A|A|675
9NO7|1|A|A|676
9NO7|1|A|A|677
9NO7|1|A|C|678
*
9NO7|1|A|G|799
9NO7|1|A|A|800
9NO7|1|A|G|801
9NO7|1|A|A|802
9NO7|1|A|U|803
9NO7|1|A|A|804
9NO7|1|A|G|805
9NO7|1|A|C|806

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain P

50S ribosomal protein L15