IL_9NO7_023

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

9NO7|1|A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_023 not in the Motif Atlas

Geometric match to IL_9DFE_023

Geometric discrepancy: 0.0989

The information below is about IL_9DFE_023

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9NO7|1|A|C|844
9NO7|1|A|G|845
9NO7|1|A|C|846
*
9NO7|1|A|G|931
9NO7|1|A|G|932
9NO7|1|A|A|933
9NO7|1|A|G|934

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L30