IL_9NO7_052

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

9NO7|1|A|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_052 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.102

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9NO7|1|A|C|1417
9NO7|1|A|G|1418
9NO7|1|A|A|1419
9NO7|1|A|U|1420
9NO7|1|A|G|1421
*
9NO7|1|A|C|1577
9NO7|1|A|U|1578
9NO7|1|A|A|1579
9NO7|1|A|A|1580
9NO7|1|A|G|1581

Current chains

Chain A

23S Ribosomal RNA

Nearby chains