IL_9NO7_082

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_082 not in the Motif Atlas

Geometric match to IL_9DFE_088

Geometric discrepancy: 0.1857

The information below is about IL_9DFE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

9NO7|1|A|C|2297
9NO7|1|A|A|2298
9NO7|1|A|G|2299
*
9NO7|1|A|C|2317
9NO7|1|A|G|2318
9NO7|1|A|G|2319
9NO7|1|A|A|2320
9NO7|1|A|G|2321

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

50S ribosomal protein L5

Chain S

50S ribosomal protein L18