IL_9NO7_148

3D structure

PDB id

9NO7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9NO7|1|a|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NO7_148 not in the Motif Atlas

Geometric match to IL_4LFB_042

Geometric discrepancy: 0.0685

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

9NO7|1|a|G|1048
9NO7|1|a|U|1049
9NO7|1|a|G|1050
*
9NO7|1|a|C|1208
9NO7|1|a|C|1209

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z

Chain w

Peptide chain release factor 1