IL_9NO7_162
3D structure
- PDB id
- 9NO7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site 2'-deoxy-A76-fMEAAAKC-peptidyl-tRNAcys at 2.13A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.13 Å
Loop
- Sequence
- G(4OC)C(5MC)*G(UR3)AAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4OC, 5MC, UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NO7_162 not in the Motif Atlas
- Geometric match to IL_4LFB_068
- Geometric discrepancy: 0.0733
- The information below is about IL_4LFB_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.3
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9NO7|1|a|G|1401
9NO7|1|a|4OC|1402
9NO7|1|a|C|1403
9NO7|1|a|5MC|1404
*
9NO7|1|a|G|1497
9NO7|1|a|UR3|1498
9NO7|1|a|A|1499
9NO7|1|a|A|1500
9NO7|1|a|C|1501
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain v
- CYS-Stop mRNA
- Chain w
- Peptide chain release factor 1
- Chain x
- Transfer RNA; tRNA
Coloring options: