IL_9NPY_004
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GC(OMC)*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NPY_004 not in the Motif Atlas
- Geometric match to IL_5MWI_003
- Geometric discrepancy: 0.101
- The information below is about IL_5MWI_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9NPY|1|i|G|1270
9NPY|1|i|C|1271
9NPY|1|i|OMC|1272
*
9NPY|1|i|G|1510
9NPY|1|i|U|1511
9NPY|1|i|C|1512
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein eS10, RPS10
- Chain O
- 40S ribosomal protein uS19, RPS15
- Chain b
- 40S ribosomal protein eS31, RPS27a
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: