IL_9NPY_006
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GACAGGA(OMU)UG*UUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 9NPY|1|i|G|1285
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NPY|1|i|G|1281
9NPY|1|i|A|1282
9NPY|1|i|C|1283
9NPY|1|i|A|1284
9NPY|1|i|G|1285
9NPY|1|i|G|1286
9NPY|1|i|A|1287
9NPY|1|i|OMU|1288
9NPY|1|i|U|1289
9NPY|1|i|G|1290
*
9NPY|1|i|U|1309
9NPY|1|i|U|1310
9NPY|1|i|C|1311
9NPY|1|i|G|1312
9NPY|1|i|A|1313
9NPY|1|i|U|1314
9NPY|1|i|U|1315
9NPY|1|i|C|1316
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain J
- 40S ribosomal protein eS10, RPS10
- Chain L
- 40S ribosomal protein eS12, RPS12
- Chain b
- 40S ribosomal protein eS31, RPS27a
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: