IL_9NPY_007

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

A(OMU)UG*UUCGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NPY|1|i|A|1287
9NPY|1|i|OMU|1288
9NPY|1|i|U|1289
9NPY|1|i|G|1290
*
9NPY|1|i|U|1309
9NPY|1|i|U|1310
9NPY|1|i|C|1311
9NPY|1|i|G|1312
9NPY|1|i|A|1313
9NPY|1|i|U|1314

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein eS10, RPS10

Chain L

40S ribosomal protein eS12, RPS12

Chain b

40S ribosomal protein eS31, RPS27a

Chain d

40S ribosomal protein uS14, RPS29