IL_9NPY_012
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9NPY|1|i|U|1494, 9NPY|1|i|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9NPY_012 not in the Motif Atlas
- Geometric match to IL_8P9A_440
- Geometric discrepancy: 0.1088
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49061.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9NPY|1|i|U|1333
9NPY|1|i|G|1334
9NPY|1|i|G|1335
*
9NPY|1|i|U|1492
9NPY|1|i|C|1493
9NPY|1|i|U|1494
9NPY|1|i|G|1495
9NPY|1|i|U|1496
9NPY|1|i|G|1497
9NPY|1|i|A|1498
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein uS3, RPS3
- Chain J
- 40S ribosomal protein eS10, RPS10
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: