IL_9NPY_018

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NPY|1|i|U|1408
9NPY|1|i|A|1409
*
9NPY|1|i|U|1432
9NPY|1|i|C|1433
9NPY|1|i|C|1434
9NPY|1|i|C|1435
9NPY|1|i|C|1436
9NPY|1|i|C|1437
9NPY|1|i|A|1438

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein uS9, RPS16

Chain U

40S ribosomal protein uS10, RPS20