IL_9NPY_019

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

9NPY|1|i|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9NPY_019 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.299

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9NPY|1|i|C|1412
9NPY|1|i|G|1413
*
9NPY|1|i|C|1427
9NPY|1|i|G|1428
9NPY|1|i|G|1429

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein uS9, RPS16

Chain T

40S ribosomal protein eS19, RPS19