IL_9NPY_022
3D structure
- PDB id
- 9NPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 9NPY|1|i|U|1585, 9NPY|1|i|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NPY|1|i|G|1541
9NPY|1|i|C|1542
9NPY|1|i|U|1543
9NPY|1|i|C|1544
9NPY|1|i|A|1545
9NPY|1|i|G|1546
9NPY|1|i|C|1547
9NPY|1|i|G|1548
9NPY|1|i|U|1549
9NPY|1|i|G|1550
*
9NPY|1|i|C|1582
9NPY|1|i|C|1583
9NPY|1|i|G|1584
9NPY|1|i|U|1585
9NPY|1|i|U|1586
9NPY|1|i|G|1587
9NPY|1|i|A|1588
9NPY|1|i|A|1589
9NPY|1|i|C|1590
9NPY|1|i|C|1591
9NPY|1|i|C|1592
Current chains
- Chain i
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein uS3, RPS3
- Chain E
- 40S ribosomal protein uS7, RPS5
- Chain Q
- 40S ribosomal protein uS9, RPS16
- Chain T
- 40S ribosomal protein eS19, RPS19
- Chain U
- 40S ribosomal protein uS10, RPS20
- Chain Y
- 40S ribosomal protein eS25, RPS25
- Chain d
- 40S ribosomal protein uS14, RPS29
Coloring options: