IL_9NPY_023

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9NPY|1|i|A|1580, 9NPY|1|i|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NPY|1|i|G|1550
9NPY|1|i|U|1551
9NPY|1|i|G|1552
9NPY|1|i|C|1553
9NPY|1|i|C|1554
9NPY|1|i|U|1555
9NPY|1|i|A|1556
9NPY|1|i|C|1557
9NPY|1|i|C|1558
*
9NPY|1|i|G|1577
9NPY|1|i|U|1578
9NPY|1|i|A|1579
9NPY|1|i|A|1580
9NPY|1|i|C|1581
9NPY|1|i|C|1582

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein uS3, RPS3

Chain J

40S ribosomal protein eS10, RPS10

Chain U

40S ribosomal protein uS10, RPS20

Chain d

40S ribosomal protein uS14, RPS29