IL_9NPY_025

3D structure

PDB id

9NPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NPY|1|i|G|1604
9NPY|1|i|G|1605
9NPY|1|i|G|1606
9NPY|1|i|A|1607
9NPY|1|i|U|1608
9NPY|1|i|C|1609
9NPY|1|i|G|1610
*
9NPY|1|i|C|1629
9NPY|1|i|A|1630
9NPY|1|i|U|1631
9NPY|1|i|G|1632
9NPY|1|i|A|1633
9NPY|1|i|A|1634
9NPY|1|i|C|1635

Current chains

Chain i

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein uS7, RPS5

Chain O

40S ribosomal protein uS19, RPS15

Chain S

40S ribosomal protein uS13, RPS18

Chain T

40S ribosomal protein eS19, RPS19