IL_9O2X_025

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9O2X|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O2X_025 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1419

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9O2X|1|A|C|569
9O2X|1|A|G|570
9O2X|1|A|U|571
9O2X|1|A|A|572
9O2X|1|A|A|573
9O2X|1|A|A|574
9O2X|1|A|G|575
*
9O2X|1|A|C|880
9O2X|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17