IL_9O2X_058

3D structure

PDB id

9O2X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (S)-betahydroxyBocK charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O2X_058 not in the Motif Atlas

Geometric match to IL_4LFB_069

Geometric discrepancy: 0.1115

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9O2X|1|A|G|1405
9O2X|1|A|U|1406
9O2X|1|A|5MC|1407
*
9O2X|1|A|G|1494
9O2X|1|A|U|1495
9O2X|1|A|C|1496

Current chains

Chain A

16S rRNA

Nearby chains

Chain X

mRNA

Chain Y

A-site tRNAPyl

Chain Z

Transfer RNA; tRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA