IL_9O2Y_060
3D structure
- PDB id
- 9O2Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.14 Å
Loop
- Sequence
- (5MC)AC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9O2Y_060 not in the Motif Atlas
- Geometric match to IL_4LFB_070
- Geometric discrepancy: 0.2329
- The information below is about IL_4LFB_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29925.3
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
9O2Y|1|A|5MC|1407
9O2Y|1|A|A|1408
9O2Y|1|A|C|1409
*
9O2Y|1|A|G|1491
9O2Y|1|A|A|1492
9O2Y|1|A|A|1493
9O2Y|1|A|G|1494
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
- Chain X
- mRNA
- Chain Y
- A-site tRNAPyl
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: