IL_9O2Y_094

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O2Y_094 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.4053

The information below is about IL_7A0S_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

9O2Y|1|a|U|870
9O2Y|1|a|U|871
9O2Y|1|a|U|872
*
9O2Y|1|a|A|905
9O2Y|1|a|U|906
9O2Y|1|a|G|907

Current chains

Chain a

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L16