IL_9O2Y_102

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9O2Y|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O2Y_102 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.3052

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9O2Y|1|a|U|1018
9O2Y|1|a|U|1019
9O2Y|1|a|A|1020
9O2Y|1|a|A|1021
9O2Y|1|a|G|1022
9O2Y|1|a|U|1023
9O2Y|1|a|G|1024
*
9O2Y|1|a|C|1140
9O2Y|1|a|U|1141
9O2Y|1|a|A|1142
9O2Y|1|a|A|1143
9O2Y|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain i

Large ribosomal subunit protein uL13