IL_9O2Y_121

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O2Y_121 not in the Motif Atlas

Geometric match to IL_8B0X_119

Geometric discrepancy: 0.1933

The information below is about IL_8B0X_119

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

tSH-tWH-tHS

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9O2Y|1|a|U|1474
9O2Y|1|a|G|1475
9O2Y|1|a|U|1476
9O2Y|1|a|A|1477
9O2Y|1|a|G|1478
*
9O2Y|1|a|U|1513
9O2Y|1|a|G|1514
9O2Y|1|a|A|1515
9O2Y|1|a|G|1516
9O2Y|1|a|G|1517

Current chains

Chain a

23S rRNA

Nearby chains