IL_9O2Y_157

3D structure

PDB id

9O2Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 70S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site (R) beta-2-hydroxy-BocLysine acid charged NH-tRNAPyl

Experimental method

ELECTRON MICROSCOPY

Resolution

2.14 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O2Y_157 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.1564

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9O2Y|1|a|C|2466
9O2Y|1|a|C|2467
9O2Y|1|a|A|2468
9O2Y|1|a|A|2469
9O2Y|1|a|G|2470
*
9O2Y|1|a|C|2480
9O2Y|1|a|G|2481
9O2Y|1|a|A|2482
9O2Y|1|a|C|2483
9O2Y|1|a|G|2484

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain Y

A-site tRNAPyl

Chain l

50S ribosomal protein L16