3D structure

PDB id
9O3I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.8 Å

Loop

Sequence
CGAAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
9O3I|1|1A|A|1045, 9O3I|1|1A|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9O3I_040 not in the Motif Atlas
Geometric match to IL_9DFE_041
Geometric discrepancy: 0.1342
The information below is about IL_9DFE_041
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

9O3I|1|1A|C|1043
9O3I|1|1A|G|1044
9O3I|1|1A|A|1045
9O3I|1|1A|A|1046
9O3I|1|1A|G|1047
9O3I|1|1A|A|1048
9O3I|1|1A|C|1049
9O3I|1|1A|A|1050
9O3I|1|1A|G|1051
*
9O3I|1|1A|U|1108
9O3I|1|1A|C|1109
9O3I|1|1A|G|1110
9O3I|1|1A|A|1111
9O3I|1|1A|G|1112

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1H
50S ribosomal protein L6

Coloring options:


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