IL_9O3I_215

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9O3I|1|2A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3I_215 not in the Motif Atlas

Geometric match to IL_9DFE_046

Geometric discrepancy: 0.0969

The information below is about IL_9DFE_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9O3I|1|2A|C|1208
9O3I|1|2A|G|1209
9O3I|1|2A|A|1210
9O3I|1|2A|U|1211
9O3I|1|2A|G|1212
9O3I|1|2A|A|1213
9O3I|1|2A|A|1214
9O3I|1|2A|G|1215
*
9O3I|1|2A|U|1234
9O3I|1|2A|G|1235
9O3I|1|2A|G|1236
9O3I|1|2A|A|1237
9O3I|1|2A|G|1238

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20