IL_9O3I_335

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

9O3I|1|2a|5MC|1400, 9O3I|1|2a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9O3I_335 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0959

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9O3I|1|2a|C|1399
9O3I|1|2a|5MC|1400
9O3I|1|2a|G|1401
*
9O3I|1|2a|C|1501
9O3I|1|2a|A|1502
9O3I|1|2a|A|1503
9O3I|1|2a|G|1504

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2v

MET-LYS-mRNA

Chain 2x

Transfer RNA; tRNA